Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W A angle_sweep() (flickerprint.common.boundary_extraction.BoundaryExtraction method) annotate_axis() (in module flickerprint.tools.plot_tools) B bayesOptFunction_maxSG_multiImages() (in module flickerprint.workflow.bayesian_optimisation) bayesOptFunction_minBlobs_multiImages() (in module flickerprint.workflow.bayesian_optimisation) BoundaryExtraction (class in flickerprint.common.boundary_extraction) C check_dir_structure() (in module flickerprint.workflow.bayesian_optimisation) collect_fourier_terms() (in module flickerprint.common.boundary_extraction) consolidate_fourier_terms() (in module flickerprint.workflow.process_image) create_axes() (in module flickerprint.tools.plot_tools) create_figure_directory() (in module flickerprint.tools.plot_tools) create_stats_csv() (in module flickerprint.analysis.statistics) D despine_axis() (in module flickerprint.tools.plot_tools) dispatch_args() (in module flickerprint.workflow.manager) DoG() (in module flickerprint.common.granule_locator) E extractParametersFromInput() (in module flickerprint.workflow.bayesian_optimisation) F findGranules() (flickerprint.workflow.bayesian_optimisation.GranuleDetectorBayes method) FittingBendingRigidityOnlyLeastSquares (class in flickerprint.fluctuation.spectra) FittingLBFGS (class in flickerprint.fluctuation.spectra) FittingLeastSquares (class in flickerprint.fluctuation.spectra) FittingSurfaceTensionOnlyLeastSquares (class in flickerprint.fluctuation.spectra) flickerprint.analysis.plotting module flickerprint.analysis.statistics module flickerprint.common.boundary_extraction module flickerprint.common.frame_gen module flickerprint.common.granule_locator module flickerprint.fluctuation.spectra module flickerprint.tools.plot_tools module flickerprint.workflow.bayesian_optimisation module flickerprint.workflow.extract_physical_values module flickerprint.workflow.manager module flickerprint.workflow.process_image module flood_granules() (flickerprint.workflow.bayesian_optimisation.GranuleDetectorBayes method) force_integer_ticks() (in module flickerprint.tools.plot_tools) format_si() (in module flickerprint.tools.plot_tools) G gen_opener() (in module flickerprint.common.frame_gen) get_best_fit() (flickerprint.fluctuation.spectra.FittingBendingRigidityOnlyLeastSquares method) (flickerprint.fluctuation.spectra.FittingLeastSquares method) (flickerprint.fluctuation.spectra.FittingSurfaceTensionOnlyLeastSquares method) get_fourier_terms() (flickerprint.common.boundary_extraction.BoundaryExtraction static method) get_image_pathes() (in module flickerprint.workflow.bayesian_optimisation) get_random_indicies() (in module flickerprint.workflow.bayesian_optimisation) get_sorted_results() (in module flickerprint.workflow.bayesian_optimisation) Granule (class in flickerprint.common.granule_locator) Granule() (in module flickerprint.common.granule_locator) GranuleDetector (class in flickerprint.common.granule_locator) GranuleDetectorBayes (class in flickerprint.workflow.bayesian_optimisation) GranuleNotFoundError granules() (flickerprint.common.granule_locator.GranuleDetector method) (flickerprint.workflow.bayesian_optimisation.GranuleDetectorBayes method) H hide_axis_lables() (in module flickerprint.tools.plot_tools) histogram2D() (in module flickerprint.analysis.plotting) I image_comp() (in module flickerprint.tools.plot_tools) L labelGranules() (flickerprint.common.granule_locator.GranuleDetector method) (flickerprint.workflow.bayesian_optimisation.GranuleDetectorBayes method) labelled_granules (flickerprint.common.granule_locator.GranuleDetector attribute) M main() (in module flickerprint.workflow.bayesian_optimisation) (in module flickerprint.workflow.extract_physical_values) (in module flickerprint.workflow.manager) (in module flickerprint.workflow.process_image) mask (flickerprint.common.granule_locator.GranuleDetector attribute) mean_radius_pixels (flickerprint.common.boundary_extraction.BoundaryExtraction property) MicroscopeFrame (class in flickerprint.common.frame_gen) module flickerprint.analysis.plotting flickerprint.analysis.statistics flickerprint.common.boundary_extraction flickerprint.common.frame_gen flickerprint.common.granule_locator flickerprint.fluctuation.spectra flickerprint.tools.plot_tools flickerprint.workflow.bayesian_optimisation flickerprint.workflow.extract_physical_values flickerprint.workflow.manager flickerprint.workflow.process_image N n_angles (flickerprint.common.boundary_extraction.BoundaryExtraction attribute) numerator() (in module flickerprint.fluctuation.spectra) O Objects() (in module flickerprint.common.granule_locator) optimisationMaxSG() (in module flickerprint.workflow.bayesian_optimisation) optimisationReduceInvalidSGs() (in module flickerprint.workflow.bayesian_optimisation) overlap_hist() (in module flickerprint.analysis.plotting) P pair_plot() (in module flickerprint.analysis.plotting) parse_arguments() (in module flickerprint.workflow.manager) plot() (flickerprint.common.boundary_extraction.BoundaryExtraction method) (flickerprint.common.granule_locator.GranuleDetector method) (flickerprint.workflow.bayesian_optimisation.GranuleDetectorBayes method) polar2cart() (in module flickerprint.tools.plot_tools) population_statistics() (in module flickerprint.analysis.statistics) process_fourier_file() (in module flickerprint.workflow.extract_physical_values) R radii (flickerprint.common.boundary_extraction.BoundaryExtraction attribute) read_data() (in module flickerprint.analysis.plotting) Result (class in flickerprint.fluctuation.spectra) run() (in module flickerprint.workflow.manager) run_gui() (in module flickerprint.workflow.manager) run_parameter_search() (in module flickerprint.workflow.bayesian_optimisation) S save() (in module flickerprint.tools.plot_tools) save_figure_and_trim() (in module flickerprint.tools.plot_tools) set_labels() (in module flickerprint.tools.plot_tools) summaryRow (flickerprint.common.frame_gen.MicroscopeFrame property) T thresholdDetector() (in module flickerprint.common.granule_locator) U update_config_file() (in module flickerprint.workflow.bayesian_optimisation) V validate_boundary() (flickerprint.common.boundary_extraction.BoundaryExtraction method) W with_traceback() (flickerprint.common.granule_locator.GranuleNotFoundError method) write_hdf() (in module flickerprint.workflow.process_image)